PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_15979.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 293aa    MW: 33484.8 Da    PI: 9.874
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_15979.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-06628123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C+ C+k F+r  nL+ H r H
  Rsa1.0_15979.1_g00001.1  6 FICEVCNKGFKRDQNLQLHRRGH 28
                             89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.37E-8528No hitNo description
Gene3DG3DSA:3.30.160.602.0E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.2E-5628IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.013628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.887628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551104878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.6E-471103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.37E-878103No hitNo description
SMARTSM0035520083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MATNRFICEV CNKGFKRDQN LQLHRRGHNL PWKLKQRTNK EQVKKKVYIC PEKTCVHHDP  60
ARALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVMSDWKA HSKFFGTREY RCDCGILFSR  120
KDSFITHRAF CDALAEESAR CSSVPPTAAS YLNNAPEAEV NLRNVKANHQ QPRQSSHQWL  180
LNENNNINIL QMGISNNQED HDTKKAAQIE SKRSSSSSNN CTAFGLMTST TSNSKHTEND  240
IKTKEVDERG FTRDFLGVGS QNRPWPLLMV NHNLPNMTQP VTTDGTPTPD MNH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528221e-158AK352822.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-P14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150167.11e-179PREDICTED: zinc finger protein JACKDAW-like isoform X1
RefseqXP_009150175.11e-179PREDICTED: zinc finger protein JACKDAW-like isoform X1
RefseqXP_009150182.11e-179PREDICTED: zinc finger protein JACKDAW-like isoform X2
SwissprotQ944L31e-110IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLM4EYE81e-178M4EYE8_BRARP; Uncharacterized protein
STRINGBra033840.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-99C2H2-like zinc finger protein